Entering edit mode
9.2 years ago
snek • 0
Can anyone give a sample command for using multi-kmer option (-m) in SOAPdenovo2? At which steps should we use this option? It is mentioned somewhere in the literature that this kind of multi-kmer assembly is used in the contig step, then do we use it in sparse-pregraph step or not? And if we don't use -m in sparse-pregraph step, what -K parameter should be given?
Thank you and regards, Snehal
Thanks I will try as per your suggestion.