python 'gnomAD_DB'
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11 months ago
sooni ▴ 20

Hello. I have a question about 'gnomAD_DB' package of Python.

How to save query result as csv file?

This is my code.

test_df = db.get_info_from_df(dummy_var_df, "AF")

I want to make the result of 'test_df' into a csv file. What should I do?

test_df.to_csv('my_data.csv', index =  False)

I tried running the code above, but it doesn't seem to save. I can't find the file.

Please help me.

gnomAD_DB python • 456 views
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Entering edit mode

The function get_info_from_df returns a Pandas Series, so your code is correct. Could you post the output of dummy_var_df.shape and len(test_df) ?

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I use 'jupyter notebook'. I tried running both codes, but no information came up. What should I do in this case?

enter image description here

The image above is my jupyter notebook window.

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