I would like to align my data to bGalGal1.pat.whiteleghornlayer.GRCg7w. I found the link on ensembl so I already made my index for kallisto.
After mapping I normally use biomart to assign gene names to the Ensembl IDs. However, I don't think that this species is in biomart. When I do
searchDatasets(mart = ensembl, pattern = "gallus") I only find the bGalGal1.mat.broiler.GRCg7b version in biomart. Is there any other way I should look for it in biomart?
Otherwise how can I assign gene names to the Ensembl IDs? Would using the gtf file from Ensembl work for that?