Mash distance python package
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6 months ago
vvs.hazia ▴ 10

I am looking for a Python package that can calculate a mash distance. For now, I found only this peace of code . Maybe someone knows the existing package? Thanks!

python MASH-distance • 766 views
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Does it have to be in python? You could just shell out to the actual mash program?

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Preferably Python, because I have Windows. I am not familiar with how to run programs from Windows command line.

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6 months ago

If you're ok using an application, then sourmash is easy and fast with good docs.

https://github.com/sourmash-bio/sourmash

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