genome data downloads for various strains
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10 weeks ago

I need to download data of various strains from gisaid database but very limited data is available. Can you suggest a best alternative for this?

gisaid hass-marr • 643 views
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If you need GISAID data then there is no alternative.

Otherwise you can grab public SARS-CoV-2 data using datasets from NCBI here: https://www.ncbi.nlm.nih.gov/datasets/docs/v2/how-tos/virus/get-sars2-genomes/

BTW: What is hass-marr you included in the tag?

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But I need a data for various genotypes which cannot be downloaded from ncbi. Anyone who can help, I can the next strain database be used or not for this or can we download various clades or specefic genotypes from a database other than gisaid? Suggest one please.

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Is there a reason you keep replying to your own messages instead of writing one complete comment and leaving it at that?

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Sorry i am new in that website and dont know too much about it

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Write out your entire message and then click Submit/Save. Don't treat this like a chat website where you write brief phrases one after the other. I'll clean up your comments for now, but please be more mindful in the future.

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