I'm trying to figure out how to download from JGI in bulk. In particular, I'd like to grab the genome and MycoCosm (https://mycocosm.jgi.doe.gov/). I honestly have no idea where to start. I see that there is something called Globus but I'm not familiar with this service and the tutorials I've found seem to be dated. With NCBI, I can use ncbi-genome-download with a command like this:
ncbi-genome-download --section genbank --formats fasta,gff,protein-fasta,cds-fasta,assembly-stats --assembly-levels all --parallel 64 --progress-bar fungi
Is there any tool that can do this or something similar with JGI genomes?
In particular, with publicly available genomes.