I am trying to generate some violin plots in monocle on a cell dataset object. Basically, I'm trying to visualize expression of certain marker genes in different clusters of a cell dataset object.
I tried to follow this online documentation using the plot_genes_violin function in monocle3 but it's giving me an error (see attached screenshot). Does anyone have any ideas on how I can troubleshoot this error or if there is a different way to run this in ggplot?
#cell dataset object = cds cds_subset <- cds[row.names(subset(rowData(cds), gene_short_name %in% c("Podxl", "Nphs1", "Nphs2"))),] plot_genes_violin(cds_subset)