Hi, I have a text file with 1000 different proteins (EDIT: proteins, not PDB-IDs), and I would like to gather all the structural information related to them from RCSB. I have never done any high-throughput work with RCSB, and the list is a bit too long to manually curate.
Does anyone know any existing methods/packages that could help me out? Ideally I'd be able to download all potentially relevant PDBs, but anything would help as a starting point.
*EDIT history: -clarified that I have gene names for the proteins, not PDB-IDs. E.g., there could be many PDBs in RCSB that contain the same protein, and my goal is to find all of them in one go.
Thanks so much, Joe