Does Beagle use VCF information such as the "GQ" value, depth, or similar?
1
0
Entering edit mode
9 months ago
a5864557 • 0

Does Beagle 5.4 take VCF information such as the "GQ" value, depth, or similar into account which producing an imputed genome?

imputation vcf beagle • 498 views
ADD COMMENT
1
Entering edit mode
9 months ago
4galaxy77 2.8k

No, it just uses the genotypes. Older versions take into account genotype likelihoods, but that's not been since 4.1

ADD COMMENT
0
Entering edit mode

Interesting. I wonder why they dropped it.

ADD REPLY

Login before adding your answer.

Traffic: 2901 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6