I am just slowly getting into single cells. I have been working with my data for 2.5 months now and tried to learn all the tips about single cell good practices.
I personally find UMAP is tricky especially when we are trying to fine-tune to get a good looking UMAP. I find TNSE is easier to produce consistent 2D visualization. Just would like to ask for some opinion whether you guys think TSNE is now popular for cluster visualization compared with UMAP. I am thinking of going forward with TSNE. Hope you can give some opinion.