Getting all the X associated genes of an organism
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8 months ago
Uri • 0

Hi,

Lets say I want to find all the synapse-associated genes of some organism (in my case Rattus norvegicus) to check what happened to them in my experiment (after DE analysis).

What is the best way to do that?

I got a list from Uniprot when typing "Rattus norvegicus synapse" (https://www.uniprot.org/uniprotkb?query=rattus+norvegicus+synapse).

I got a list from NCBI typing the same (https://www.ncbi.nlm.nih.gov/gene?term=Rattus+norvegicus+synapse+AND+(alive%5Bprop%5D)&cmd=DetailsSearch).

Lastly I took a list from Gene Ontology site typing the same (https://amigo.geneontology.org/amigo/search/bioentity?q=rattus%20norvegicus%20synapse)

maybe I should use some specific filters?

The lists are pretty different from each other: enter image description here

What do you think? would like to hear any suggestion or comment.

Thanks a lot,
Uri Levy

Rattus-norvegicus neurobiology • 259 views
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