I am just trying to get a (one to many) mapping from uniprot accession -> Ensembl ids.
In the spirit of exploration, I have the following code to use
bioservices.UniProt pull all possible columns for the selection of uniprot accession ids.
from bioservices import UniProt u = UniProt() accession_numbers = ['P30561', 'P53762'] result = u.get_df(accession_numbers) type(result) result.columns.tolist()
I know that this mapping exists in UniProt, here is the annotation field on the uniprot website for the first accession (P30561):
However, going through the output columns of
result above, the column labeled "Annotation" has the following contents:
0 5.0 1 5.0 2 5.0 3 5.0 4 5.0 5 5.0 6 4.0 7 1.0
This is clearly not a list of Ensembl ids