Hi, I'm trying to generate some circos plots for structural variants, using the tool circos. To this I understand I need to specify a karyotype file.
Please correct me if I'm wrong. But my understanding is that I need to create this karyotype file for GRCh38? I currently have my called structural variant data in the following format (bed and csv files).
Chromosome Start End chr1 110000 120000 Chr5 150000 200000
Can I ask is there a tool to convert this data? Or am I going completely wrong and there is a preset Grch38 karyotype file that I need to use?
Thank you in advance