Error: Require Genotypes in VCF file in order to output IMPUTE format.
0
0
Entering edit mode
10 months ago
Warrenkb • 0

Hello,

I am trying to export a VCF file in IMPUTE format and keep getting the same error message:

Code:

module load htslib/1.17
module load samtools/1.17
module load bcftools/1.17
module load java/17.0.8
module load python3
module load vcftools

vcftools --vcf name.vcf --IMPUTE
Error: Require Genotypes in VCF file in order to output IMPUTE format.

I am not sure why I am getting an error message because the genotypes are in the file. Here are the first few lines of my VCF file:

VCF FILE INFORMATION

I would very much appreciate the help.

vcftools VCF • 374 views
ADD COMMENT

Login before adding your answer.

Traffic: 881 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6