xCell different between R and website
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4 months ago

I did xCell on the website and on R but I have two different results:enter image description here

and enter image description here

you have any idea of why? Did it happen to someone else? (I used the same matrix for both the analysis)

Thank you

xcell • 459 views
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What type of data did you analyze ? Is it RNA-seq ?

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yes, is a matrix of bulk rna-seq

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Did you check the RNA-seq box on the website ?

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Yes, on the website i put N=64 and I sign for RNA-seq data bottom

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Maybe try to provide a few lines of your dataset to the package creator, as I saw you opened an issue on gihub

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ok thank you! I will try because I have no idea of why I have different results

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