Interpreting 3D refine results
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5 months ago
Curious ▴ 10

Hello!

I used 3D refine to refine the model of a protein I'm working on. It generated five refined models. How do I judge which one is the best? Which parameter should I look at?

3Drefine • 370 views
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5 months ago
Joe 21k

Does the tool not offer any metrics for how the models are refined and chosen?

There are some fairly standard tools like TM-score or pLDDT but it depends on the model and manner of refining as to what is relevant.

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The tool shows the refinement score and the RWPlus. The lower the refinement score, the better. The same goes for the RWPlus. After a while I understood what to do. Thank you very much for your reply!

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