I am having problems with the BaseRecalibrator during the running process
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7 weeks ago
Foad ▴ 10

I am analyzing whole genome sequencing data in saffron(C.cartwrightianus) plants. However, the VCF file for BaseRecalibrator required by the GATK program is unavailable for this plant. Can you please guide how to proceed?

Thanks in advance

Foad

BaseRecalibrator VCF GATK • 195 views
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