How to interpret merged_calls result of command line from CNVpytor
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7 months ago
Nannapat • 0

Hi I used command line on HPC as below for trio sample.

cnvpytor -root proban1.pytor father1.pytor mother1.pytor -view 100000

set Q0_range -1 0.5

set p_range 0 0.0001

set p_N 0 0.5

set size_range 50000 inf

set dG_range 100000 inf

set print_filename mergedtrio1view100000annotatemerge.tsv

set annotate

print merged_calls

quit

Then I got result as below

enter image description here

My question are

  1. I think data on column D, E and F that are copy number, doesn't I.
  2. What does the values on column G?

Please help me, thank a lot anyone in advance.

CNVpytor • 409 views
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They describe the output format here. However, it seems that it doesn't match with yours. Maybe there are other files in the output folder.

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I think I have already checked their documents, but no clarification as my column G.

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