Entering edit mode
7 months ago
Nannapat
•
0
Hi I used command line on HPC as below for trio sample.
cnvpytor -root proban1.pytor father1.pytor mother1.pytor -view 100000
set Q0_range -1 0.5
set p_range 0 0.0001
set p_N 0 0.5
set size_range 50000 inf
set dG_range 100000 inf
set print_filename mergedtrio1view100000annotatemerge.tsv
set annotate
print merged_calls
quit
Then I got result as below
My question are
- I think data on column D, E and F that are copy number, doesn't I.
- What does the values on column G?
Please help me, thank a lot anyone in advance.
They describe the output format here. However, it seems that it doesn't match with yours. Maybe there are other files in the output folder.
I think I have already checked their documents, but no clarification as my column G.