Question: Mendelscan Version 1.2.1 Error? 0 Matched With Vep Annotation
gravatar for Hypotheses
6.7 years ago by
Bangkok, Thailand
Hypotheses90 wrote:

I tried to use MendelScan on a single vcf file. I created VEP file using ensembl variants effect prediction program.

I'm not quite sure what caused the errors. The VEP file format looked similar to the file that came with the example data. The example data also ran fine without an errors.

I tried to check the position in the VEP file. The variants exists in both vcf and vep file, although the format is different.

What did I do wrong? Am I supposed to create VEP file differently?

Thank you.

ADD COMMENTlink written 6.7 years ago by Hypotheses90
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1075 users visited in the last hour