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6 months ago
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Hi all,
Is there any tool that can help to annotate the genes from GTF file to a (columns) in the vcf file?
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample1
1 51479 . T A 570.64 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121e+00;DP=25;ExcessHet=0.0000;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=60.00;MQRankSum=0.00;QD=22.83;ReadPosRankSum=0.953;SOR=0.760 GT:AD:DP:GQ:PL 0/1:5,20:25:99:578,0,99
1 51803 . T C 627.06 PASS AC=2;AF=1.00;AN=2;DP=19;ExcessHet=0.0000;FS=0.000;MLEAC=2;
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6 months ago by
Pierre Lindenbaum
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