How plot multiple enrichment plot together
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Entering edit mode
8 months ago
synat.keam ▴ 100

Dear all,

I am wondering whether you are familiar with Gene Set Enrichment and know how to plot the enriched pathways in a single plot together. You can help review the link

https://crazyhottommy.github.io/scRNA-seq-workshop-Fall-2019/scRNAseq_workshop_3.html

I have deg from two groups of single cell seurat and would like to perform gene set enrichment and plots all upregulated pathways together in a single plots rather than splitting them into several plots.

I have attached the enrichment plot here. Hope you could help!

Kind Regards,

synat

enter image description here

singlecell • 431 views
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Entering edit mode
8 months ago
dthorbur ★ 2.6k

The plotEnrichment function is just a ggplot2 wrapper. See source code here. If you are competent in R and ggplot2, you can adapt their code or write your own. Regardless, I suggest giving it a go and if you get stuck, make another post with what you've tried and why you think you're getting stuck.

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