I read the official instructions in galaxy about this question but still can't get aware of it. Hope someone can help. https://wiki.galaxyproject.org/Admin/Config/ToolDependencies
I got the galaxy-dist folder on my home directory. And run: sh run.sh Then can login to local galaxy by type http://localhost:8080 in browser.
I downloaded the tools I need to my local folder: ~/tools/, and then make them. Then I can run them from command line (Mac OS). But I don't understand how to add them to galaxy panel. I have set this tools folder to the galaxy tool_dependency_dir=~/tools/.
And what else I need to setup. It seems I need to write a XML file and a LOC file. And where I can add the "requirement" tag in galaxy. I can't find it.
Thanks very much