Where to find the homopolymer regions bed file for Hg002 genome?
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6 weeks ago

Greetings,

I am doing an experiment where I am trying to analyze the errors in the homopolymer regions between the polished reference hg002 genome and hifiasm assembly done inhouse using just long ONT duplex reads.

I am not able to find the .bed files for the hg002 genome. All I was able to find was the homopolymer .bed files for chm13, GRCh38, GRCH37 reference genomes here.

Thanks a lot!

simple-repeats hg002 bed homopolymer-regions • 601 views
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Hi! Should I delete the stack exchange post? I didn't know that cross posting is bad. https://meta.stackoverflow.com/a/425789/5140632

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You should at least include links to the other post in each post to make users aware that you're seeking help in multiple places.

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Thank You! Will keep this in mind going forward.

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