Load a full GFF3 into annotation track using arrow (Apollo)
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4 weeks ago
renan.igor • 0

I'm new to using the Apollo platform and was trying to use the arrow plugin to perform some operations.

I want to load a full GFF3 into an annotation track using the arrow annotations load_gff3 command, but I'm not sure if I'm using it correctly.

This is the documentation: https://python-apollo.readthedocs.io/en/latest/commands/annotations.html

Command: Usage: arrow annotations load_gff3 [OPTIONS] ORGANISM GFF3

My command: arrow annotations load_gff3 Leishmania /home/renanigor/Downloads/TriTrypDB-67_LdonovaniBPK282A1.gff

Note: This is the path where my GFF3 file is located - /home/renanigor/Downloads/

OBS: I'm running Apollo with docker

I'm running this command, but nothing happens.

Does anyone know how I can do this?

arrow python-apollo Apollo • 534 views
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Hi there, I let a developer know of this thread and they said they can check it out next week. Feel free to post to the https://github.com/galaxy-genome-annotation/python-apollo issues also

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