FAM FILE
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29 days ago
Eleonora • 0

I have to do an association study with Plink and I have to use a FAM file. I have tried many times but I always get the error that not all the individuals' IDs are present. I have built the file several times but I still have problems, how can I solve it?

file Fam • 181 views
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Entering edit mode
28 days ago
Eleonora • 0

I'm using these commands:

bcftools merge ... ... > MyVars.bcf

plink --noweb --bcf MyVars.bcf --keep-allele-order --indiv-sort file MySampleListing.list --vcf-idspace-to _ --const-fid --allow-extra-chr 0 --split-x b37 no-fail --make-bed --out MyVars ;

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