Is there a real ground truth for CNV data?
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15 days ago
jennyp0706 • 0

Dear Community,

I planning to benchmark somatic CNV callers using real ground truth tumor CNV set (not from microarray data or so on..) I looked through articles but happen to not find the appropriate data to use.... So, I am reaching out to seek help from experts in the field as I might be missing the data due to my lack of experience. If there isn't an existing real ground truth CNV set, I am considering creating one myself. However, I am unsure about the difficulty and feasibility of this task.

Could anyone provide advice or share methods on how to create a real ground truth CNV set? Any guidance or recommendations would be greatly appreciated.

Thank you in advance for your help. Best regards, newcomer in bioinformatics

CNV • 126 views
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