PbJelly Resume
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Entering edit mode
8 days ago

Hi everyone

I was running a mapping step for PbJelly gap filling. However, It stop after three days with the following error:

  File "/home/lissa/ENV/lib/python3.8/site-packages/pbjelly-16.0b1-py3.8.egg/EGG-INFO/scripts/m4pie.py", line 120, in uniteTails
    data = datGrab.search(read.qname).groupdict()
AttributeError: 'NoneType' object has no attribute 'groupdict'

Do you know if there is some way to resume PbJelly?. I think it already finished a big part of the mapping. Additionally, do you know how I can resolve this problem?.

Thanks in advance for your answer.

Gap-filling PacBio PbJelly • 140 views
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