PbJelly Resume
0
0
Entering edit mode
5 months ago

Hi everyone

I was running a mapping step for PbJelly gap filling. However, It stop after three days with the following error:

  File "/home/lissa/ENV/lib/python3.8/site-packages/pbjelly-16.0b1-py3.8.egg/EGG-INFO/scripts/m4pie.py", line 120, in uniteTails
    data = datGrab.search(read.qname).groupdict()
AttributeError: 'NoneType' object has no attribute 'groupdict'

Do you know if there is some way to resume PbJelly?. I think it already finished a big part of the mapping. Additionally, do you know how I can resolve this problem?.

Thanks in advance for your answer.

Gap-filling PacBio PbJelly • 228 views
ADD COMMENT

Login before adding your answer.

Traffic: 2097 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6