MGI DNBelab C Series High-throughput Single-cell RNA Library Preparation Set V3.0, Seurat
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4 weeks ago
yau • 0

Dear All,

I would like to know if I can input MGI single cell rna-seq data into Seurat for analysis?

I only used 10X data for seurat before.

What will be the "filtered_feature_bc_matrix" which includes barcodes.tsv.gz, features.tsv.gz and matrix.mtx.gz in MGI dnbc4tools output?

thanks!

rna-seq seurat single-cell mgi • 208 views
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4 weeks ago
bk11 ★ 2.8k

Did you check this link below where it show how Seurat or Scanpy can be used for downstream analyses from MGI dnbc4tools output?

https://github.com/MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software/blob/version2.0/doc/io.md

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