How VEP BAM Edit works?
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Entering edit mode
27 days ago
bharata1803 ▴ 560

I read about this BAM edit in this page: https://useast.ensembl.org/info/docs/tools/vep/script/vep_other.html section Correcting transcript models with BAM files.

What I don't understand is, how VEP actually correct this? For example, this transcript NM_030582.4 has BAM edit which basically delet 9 nt in the cDNA sequence. Any explanation how the correction is applied with regard to cDNA, CDS, HGVS c. etc?

variant VEP • 131 views
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