Entering edit mode
9 months ago
saqlain
▴
90
Hi everyone!
I have a compostion dataframe which contains spotwise compositons of cell types and their cluster informations. I am required to compare the mean abundance of cell types in each cluster with other clusters. Which test should I use and how should I do it in python/R.
my dataframe looks like the following
where a, b, c, d are the cell types (columns) and s1, s2 .. are spots (rownames) and one extra column clusters,which range form 1-12.
a little explanation of the test would be helpfull too.
thanking you in anticipation.
