host-specific pathogens taxonomy IDs
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4 weeks ago

Does anyone know if there is a way to get pathogens taxon IDs data based on the pathogen's host filter? For example I need taxon ids only for those pathogens that are known to infect humans. I searched NCBI tools, visited their ftp page, but couldn't find any relevant info on this matter. Please, help

taxonomy taxon NCBI host-specific-pathogens • 299 views
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Entering edit mode
4 weeks ago

using wikidata (sadly, the list is quite incomplete).

SELECT ?organism1 ?name1 ?ncbi_taxon_id1 ?organism2 ?name2 ?ncbi_taxon_id2 WHERE {
 ?organism1 wdt:P225 ?name1 . 
 ?organism1 wdt:P685 ?ncbi_taxon_id1 . 

  ?organism2 wdt:P2975 ?organism1 .


  ?organism2 wdt:P225 ?name2 . 
 ?organism2 wdt:P685 ?ncbi_taxon_id2 .  

 SERVICE wikibase:label {
 bd:serviceParam wikibase:language "en" .
 }

}
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