EnhancerAtlas
1
0
Entering edit mode
4 weeks ago
SEJAL • 0

On www.enhanceratlas.org (EnhancerAtlas 2.0), there is a database for enhancer-gene interactions for different cell lines. The data format is as follows:

For human, the data format in the file listed as "A:B-C_D$E$F$G$H I":

A - Chromosome of enhancer.
B - The starting position of enhancer.
C - The ending position of enhancer.
D - Gene ensembl ID.
E - Gene ensembl Name.
F - chromosome of gene.
G - the position of the gene transcription start site.
H - The strand of DNA the gene located.
I - The predition score of the enhancer-gene interaction.

For mouse and fly, the data format in the file listed as "A:B-C_D$E$F$G H":

A - Chromosome of enhancer.
B - The starting position of enhancer.
C - The ending position of enhancer.
D - Gene ensembl ID.
E - Gene ensembl Name.
F - chromosome of gene.
G - the position of the gene transcription start site.
H - The predition score of the enhancer-gene interaction.

what is the prediction score given in the last column (I and H)?

enhancer hic • 333 views
ADD COMMENT
2
Entering edit mode
4 weeks ago
LChart 4.3k

These are scores from EAGLE: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6821050/

ADD COMMENT

Login before adding your answer.

Traffic: 2109 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6