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16 days ago
SEJAL
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0
I used chromHMM to get different states/segments. My output file is the bed file. I want to annotate it and see which genes lie in a particular state based on the distance from TSS. How can it be done?
By
bedtools intersect
(https://bedtools.readthedocs.io/en/latest/content/tools/intersect.html ) with a second BED that contains the relevant annotations.I want to get the genes which fall in these segments, my segments are active promoter regions and I need the genes whose promoters fall in these active promoter regions