Long-read sequencing data simulation using CAMISIM
1
0
Entering edit mode
15 days ago
anna • 0

Hello everyone! I am very new to bioinformatics and have troubles using CAMISIM for long-read sequencing data simulation. CAMISIM paper says: "Further available read simulators are <...> pbsim for simulating Pacific Biosciences data and nanosim for simulating Oxford Nanopore Technologies reads". However, in configuration file template there is a line "# Read simulator type (only ART is currently supported)". Am I understanding it wrongly? Do I use wrong config file, because there are many of them and github manual doesn't state these details clearly.

Thank you !

CAMISIM • 221 views
ADD COMMENT
0
Entering edit mode
15 days ago

Since they explicitly have a pbsim config file, the comment you found is probably just a leftover from another config file that was copied over

https://github.com/CAMI-challenge/CAMISIM/blob/master/defaults/pbsim_config.ini

ADD COMMENT

Login before adding your answer.

Traffic: 1208 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6