Entering edit mode
8 days ago
buffealo
▴
130
I am getting the following error with counts <- dba.count(samples, bParallel=FALSE)
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Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
1 remote errors, element index: 1
0 unevaluated and other errors
first remote error:
Error in IRanges:::find_overlaps_in_groups_NCList(ranges(query), q_space, : 'q_groups' must be a CompressedIntegerList object
I tried running
library(BiocParallel)
register(SerialParam())
Before this attempt, I ran counts <- dba.count(samples)
and the error was:
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Error processing one or more read files. Check warnings().
There were 17 warnings (use warnings() to see them)
> warnings()
Warning messages:
1: In mclapply(arglist, fn, ..., mc.preschedule = TRUE, mc.allow.recursive = TRUE) :
all scheduled cores encountered errors in user code
2: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
3: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
4: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
5: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
6: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
7: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
8: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
9: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
10: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
11: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
12: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
13: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
14: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
15: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
16: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
17: error in evaluating the argument 'x' in selecting a method for function 'assay': BiocParallel errors
I am stuck and looking forward to any help. Thank you
pls help, I need to solve this problem