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5 days ago
Wenhai
•
0
When I used vg rna
, I found that some reference transcripts had multiple projections on the same haplotype, and the transcript length would increase abnormally compared with the reference transcript. What is the reason for this?
This seems to lead to errors in rpvg inference, because I found it by backtracking the error reports of rpvg.
Here are some examples
Name Length Transcripts Haplotypes
OsMH_01T0147400.1_R1 2507 OsMH_01T0147400.1 MHChr01,ZHChr01
OsMH_01T0147400.1_H1 7588 OsMH_01T0147400.1 ZHChr01
OsMH_01T0147400.1_H2 2507 OsMH_01T0147400.1 ZSChr01
OsMH_01T0147400.2_R1 1504 OsMH_01T0147400.2 MHChr01,ZHChr01
OsMH_01T0147400.3_R1 2244 OsMH_01T0147400.3 MHChr01,ZHChr01
OsMH_01T0147400.3_H1 7325 OsMH_01T0147400.3 ZHChr01
OsMH_01T0147400.3_H2 2244 OsMH_01T0147400.3 ZSChr01
OsMH_01T0147400.4_R1 1248 OsMH_01T0147400.4 MHChr01,ZHChr01
OsMH_01T0147400.4_H1 1248 OsMH_01T0147400.4 ZSChr01
OsMH_01T0285100.1_R1 1249 OsMH_01T0285100.1 MHChr01
OsMH_01T0285100.1_H1 1249 OsMH_01T0285100.1 ZHChr01
OsMH_01T0285100.1_H2 75526 OsMH_01T0285100.1 ZHChr01
OsMH_01T0285100.1_H3 171674 OsMH_01T0285100.1 ZHChr01
Thanks for your help.