Entering edit mode
5 days ago
tmanjonas
•
0
Hey everyone, im currently trying to use PyDeseq2 on bulk RNA-seq data, but i keep getting this error when running the dds.deseq2().
This is my metadata:
And this my counts:
Shouldnt the indices of both tables be the same to correctly match samples with condition ?
Id appreciate any help. Thanks :)
You most likely have duplicates somewhere in there in the column that is currently serving as index to (I am guessing) the counts DataFrmae. Take a look at comments on this post for some help: https://stackoverflow.com/q/77251779 .