Entering edit mode
5 days ago
Assa Yeroslaviz
★
1.9k
I have two later time points I would like to compare with time point t0.
I have wo t0 samples and each four t8 and t16 samples. The count matrix is as such:
Would this design matrix be correct, when running the mageck-mle
:
sample baseline t8 16
ctrl_t0_1 1 0 0
ctrl_t0_2 1 0 0
ctrl_t8_1 1 1 0
ctrl_t8_2 1 1 0
ctrl_t8_3 1 1 0
ctrl_t8_4 1 1 0
ctrl_t16_1 1 0 1
ctrl_t16_2 1 0 1
ctrl_t16_3 1 0 1
ctrl_t16_4 1 0 1
And would the results be similar to running the two comparisons (t8 and t16) separately?
thanks
Assa