Signac for mgatk scRNA-seq data
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25 days ago
marco.barr ▴ 150

Hi everyone, I’ve just analyzed some 10x scRNA data using the mgatk tenx pipeline to gather information on a heteroplasmic variant of interest. I then applied t-SNE to observe the heteroplasmy variation across cells. I was wondering if the R Signac package, although designed for scATAC DNA, could still help me first define the heteroplasmic variant of interest and then assist with my subsequent needs on my scRNA data.

I was reading this: mito_stuartlab

I’d appreciate any advice. Thank you very much!

mgatk Signac scRNA-seq • 240 views
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