Entering edit mode
23 days ago
Nikolas
•
0
Hi everyone.
I am trying to extract some simple directionality for the Reactome pathways, i.e. simple information of the type: Protein A activates Protein B
I used paxtools and the human level3 biopax file to create a SIF file:
java -jar paxtools-6.0.0.jar toSIF --extended input output
and i get what I want e.g.
CHEBI:1294 reacts-with CHEBI:15378 .....
but the whole results contains only small molecules from ChEMBL.
Is there some other file that contains the information I want?
Any input is welcome
Thanks for the input and sorry for taking so long to answering. I had a look at the Reactome graph database but I should actually reach their Help Desk.