Genetic Trio Phasing with EAGLE2 using hg38

Question

[heskett]

I would be very grateful if someone could point me to example code where I can phase genetic trios using EAGLE. The github and manual pages are extremely minimal. I would like to use hg38, and I have mom, dad, and child short-read sequencing data. Thank you!

INPUT: mom.fastq.gz dad.fastq.gz child.fastq.gz

DESIRED OUTPUT: child.phased.genotype.vcf