Hi guys,
I have a paired end fastq file with header like this:
@SRR8117283.1.1 1 length=84
GGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTATCGGAAGAGCACACGTCAGAACTC
+SRR8117283.1.1 1 length=84
FFF,F:FFF:::FFFFFFFFFF:,FFFFFFFFFFFFFFF,F:FFF,F,F:FF:FF:F,,:,:F,FFFFF,F,,FFF,FFF,:F:
And
@SRR8117283.1.2 1 length=100
CCCTAACCCTAACCATAACACAAACACAAACCCAAACCCAAACCCAAACCAAAACACACACCAAAACCACACCAAAAAACAAAACCCTAACACAAACAAA
+SRR8117283.1.2 1 length=100
,FF,,FFFF:FFF:,,F::,:F::,,,F,,,,,F,:,,,F,:F,,F,,,F,F,FF,,F,,,,F,:,,,:,F::F,F:,,:::F:F,F,F:,,,,:,,:,,
In order to run CellRanger DNA pipeline for alignment, how should I modify the header? Right now I got invalid read Qname from CellRanger DNA.
Thank you! The Data Access is really helpful!