Setting ploidy level in gatk
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4 months ago
analyst ▴ 70

Dear all,

i am working on sugarcane WGS analysis. I downloaded reference genome SofficinarumxspontaneumR570 from phytozomev13. In variant calling step i do not know which ploidy should i set in haplotypecaller as sugarcane is anueploid.

Please guide about ploidy level of sugarcane hybrid variety SofficinarumxspontaneumR570.

Thanks alot.

ploidy • 452 views
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I will look into it thanks!

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