Nobody can tell you because you do not say that exactly your strategy is. Generally, FPKM is a normalized unit, but it has been shown many times before that plain FPKM, that is correction only for depth (but not composition) and length might underperform if there are a lot of DEGs between groups. Here is a writeup from the past explaining plain library size vs something more sophisticated: TMM-Normalization
A great view for what composition bias is: See StatQuest