Protein annotation, gene annotation, hordeum vulgare RNA-Seq
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23 days ago
martta95 ▴ 10

Hello,

I have list of transcript mapped to Hordeum vulgare genome, e.g.,

HORVU.MOREX.r2.UnG0628590.1 HORVU.MOREX.r2.5HG0361000.1 HORVU.MOREX.r2.UnG0628880.1

I would like to add annotation about protein function and protein name, GO and KEGG Id?

protein vulgare RNA-Seq hordeum gene • 304 views
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there is a biomart for your genome http://plants.ensembl.org/index.html but I'm afraid the annotation for GO are empty, and KEGG is missing...

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23 days ago
GenoMax 149k

UniProt appears to have proteomes for Barley: https://www.uniprot.org/proteomes/UP000011116

That may be your best bet. They also have GO annotations. You will have to map your ID's on to these.

barley

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