How can I identify genes with the MSTRG notation?
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26 days ago

I have a raw counts table from a RNA-Seq experiment, but the gene IDs are really confusing.. I have both the gene IDs and the gene names, but some gene IDs are in ensembl notation, while others are in MSTRG notation..

ensembl notation

some gene_names are missing.. I can't find HEPCIDIN (HAMP), for example...

some gene_names are blank, especially with the MSTRG notation...

gene_name is missing

some genes appear in duplicate...

which(Raw_count$gene_name=="S100A8")

1 80455 80510

some of them are together in a single MSTRG ID...

enter image description here

Can you help me understand the logical of this kind of notation? How can I find my GOIs?

R stringtie RNA-Seq • 369 views
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