Cytoscape KEGG plots reverting to original layout after changing style or column
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14 days ago
Adrian • 0

I'm trying to use cytoscape to better plot kegg pathways. I've obtained xml files from pathview and imported via "import network via file system".

Problem 1: Missing quite a lot of info especially arrows and certain symbols like small circle or rectangle. It also created many arrows that arent present from the pathview png output.

Problem2: Probably a cytoscape issue, but whenever I change the style even just the font size, all the nodes reverts back to original position after painstakingly moving them one by one.

Is there any workarounds for these problems?

Thanks in advance

kegg cytoscape • 236 views
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