Mitochondrial Annotation Tool

Question

[adarsh]

Hi,

I am working on de novo assembly of bovine mitochondrial genome. I have done assembly and I need to annotate the genome and generate circular genome plot. The Mitos2 webserver is not working currently and I am unable to run the galaxy version.

Please suggest any other online tool or command line tool that can be used for this analysis.

Looking forward for suggestions.

Thanks

Answer 1

[patrickdm]

Hello, for the annotation you could try Prokka using the option --kingdom Mitochondria (--gcode 5).

Hth.