Best tool to qc gwas summary stats for a meta analysis
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3 hours ago
Rangarajan ▴ 10

Hey Folks,

Currently trying to do a meta analysis of some GWAS data but having trouble with the data qc. For example, some have RSIDS and others dont. Most do not have INFO scores either. I was wondering what tool would be best for qcing our data. We tried gwasinspector and it wasn't really working so anything would be helpful!

The files are just sumstats and there's liftover issues as well. We want to standardize based on rsids to get around that

Thank you

gwas • 37 views
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