I want to get the genomic positions of 3'UTR of RefSeq genes,
but I don't know how to get the information about 3'UTR.
RefSeq_geneID chrXXX:start-end ( 3'UTR position )
Any helps would be much appreciated. Thank you.
see Retrieve 3'UTR sequences for a (complete) list of genes using Biomart/UCSC
Hi- if your species is on UCSC Genome Browser, you can download a bed file of 3'UTR positions with:
Go to http://genome.ucsc.edu/cgi-bin/hgTables
Select your specie and assembly; Group: Genes and Gene predictions; Track: RefSeq genes; Output Format: BED; Output file: myutr.bed
-> Get Output
-> Create one BED record per: 3' UTR Exons
-> Get BED
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